Protein Databases

Abbreviation	Database
UniProt	• Universal Protein knowledgebase (Swiss-Prot @ TrEMBL)
	@ Protein Structure Databases
	2-D reference gel of human healthy pulp tissue
ASEdb	Alanine Scanning Energetics database
CluSTr	Automatic classification of UniProt and IPI proteins into groups of related proteins
COGs	Clusters of Orthologous Groups of proteins
FusionDB	Database of bacterial and archaeal gene fusion events
Phospho.ELM	Database of experimentally verified phosphorylation sites in eukaryotic proteins
BioGRID	Database of protein and genetic interactions
PROSITE	Database of protein families and domains
InterPro	Database of protein families, domains and functional sites
PSORTdb	Database of Protein Subcellular Localizations for bacteria and archaea
IntAct	Database system and analysis tools for protein interaction data
Kinomer	Eukaryotic Protein Kinase Groups
SelenoDB	Eukaryotic selenoprotein genes, proteins, SECIS elements and related molecules
	Evola: ortholog information of all human genes among vertebrates
ConSurf-DB	Evolutionary conservation profiles of protein structures
	Globin Gene Server
	G-Protein Coupled Receptor Database
	Heme Protein Database
	Human Protein Atlas
HPRD	Human Protein Reference Database
GPCRDB	Information system for G protein-coupled receptors (GPCRs)
NucleaRDB	Information System for Nuclear Receptors
KChannelDB	Information System for Potassium channels
IKMC	International Knockout Mouse Consortium Database
IPI	International Protein Index
	IUPHAR Compendium of Ion Channels
	List of post-translational modifications
	Mammalian Degradome Database: Complete repertoire of proteases expressed by a tissue or organism
MPDB	Membrane Protein Data Bank
MiST	Microbial Signal Transduction database
CDD	NCBI Conserved Domain Database
	NCBI Entrez Protein Database Search
NURSA	Nuclear Receptor Signaling Atlas
PeroxiBase	Plant Peroxidase Database
PSDB	Plant Subtilase Database of plant subtilisin-like serine proteases
	Prokaryotic Protein Phosphatase Database
	Proteases of E. coli
PDBTM	Protein Data Bank of Transmembrane Proteins
SYSTERS	Protein Family Database
PMD	Protein Mutant Database
PhosphaBase	Protein Phosphatase Information Resource
PRIDE	PRoteomics IDEntifications database
SRPDB	Signal Recognition Particle Database
DBD	Transcription factor prediction database
TCDB	Transport Classification Database - for membrane transport proteins
GELBANK	Two-dimensional gel electrophoresis (2DE) images of proteomes
2DPAGE	Two-dimensional polyacrylamide gel electrophoresis database
	UniProt Knowledgebase Manual
VKCDB	Voltage-gated potassium channel database
	World-2DPAGE Portal - gel-based proteomics databases

Abbreviation

Database

UniProt

• Universal Protein knowledgebase (Swiss-Prot @ TrEMBL)

@ Protein Structure Databases

2-D reference gel of human healthy pulp tissue

ASEdb

Alanine Scanning Energetics database

CluSTr

Automatic classification of UniProt and IPI proteins into groups of related proteins

COGs

Clusters of Orthologous Groups of proteins