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Biomedical directory
Biomedical Databases
Carbohydrate Databases
Enzyme Databases
Genome Databases
Genome, Prokaryotic
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Lipid Databases
Metabolic Pathways
Mutation Databases
Nomenclature
Nomenclature - Gene
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Protein Tools
Sequence Tools
Biomedical
: Protein Sequence Databases
Abbreviation
Database
UniProt
• Universal Protein knowledgebase (Swiss-Prot @ TrEMBL)
@ Protein Structure Databases
ASEdb
Alanine Scanning Energetics database
ARABI-COIL
Arabidopsis Coiled-Coil Protein Database
CluSTr
Automatic classification of UniProt and IPI proteins into groups of related proteins
COGs
Clusters of Orthologous Groups of proteins
ProtRepeatsDB
Database of amino acid repeats in genomes
FusionDB
Database of bacterial and archaeal gene fusion events
DCCP
Database of Copper-Chelating Proteins
Phospho.ELM
Database of experimentally verified phosphorylation sites in eukaryotic proteins
BioGRID
Database of protein and genetic interactions
PROSITE
Database of protein families and domains
InterPro
Database of protein families, domains and functional sites
IntAct
Database system and analysis tools for protein interaction data
EcoProDB
E. coli protein database of protein information identified on 2-D gels
ConSurf-DB
Evolutionary conservation profiles of protein structures
G-Protein Coupled Receptor Database
Human Protein Atlas
HPRD
Human Protein Reference Database
GPCRDB
Information system for G protein-coupled receptors (GPCRs)
NucleaRDB
Information System for Nuclear Receptors
KChannelDB
Information System for Potassium channels
IPI
International Protein Index
IUPHAR Compendium of Voltage-gated Ion Channels
List of post-translational modifications
Mammalian Degradome Database: Complete repertoire of proteases expressed by a tissue or organism
MPDB
Membrane Protein Data Bank
MiST
Microbial Signal Transduction database
Music of Protein Sequences
CDD
NCBI Conserved Domain Database
NCBI Entrez Protein Database Search
NURSA
Nuclear Receptor Signaling Atlas
PeroxiBase
Plant Peroxidase Database
PSDB
Plant Subtilase Database of plant subtilisin-like serine proteases
PROMISE
Prosthetic groups and Metal Ions in Protein Active Sites Database
Proteases of E. coli
PDBTM
Protein Data Bank of Transmembrane Proteins
SYSTERS
Protein Family Database
PhosphaBase
Protein Phosphatase Information Resource
PRIDE
PRoteomics IDEntifications database
SRPDB
Signal Recognition Particle Database
SWISS-PROT Protein knowledgebase
TCDB
Transport Classification Database - for membrane transport proteins
GELBANK
Two-dimensional gel electrophoresis (2DE) images of proteomes
2DPAGE
Two-dimensional polyacrylamide gel electrophoresis database
