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Biomedical : DNA, RNA and Protein Sequence Databases

AbbreviationDatabase
DDBJ• DNA Data Bank of Japan
• EMBL Nucleotide Sequence Database
• Entrez Nucleotide Database Search
BiozonA meta database of molecular data
ALFREDALlele FREquency Database
ProSplicerAlternative Splicing Database based on Protein, mRNA, and EST Sequences
H-InvDBAnnotated Human Gene Database
Bioperl Project - open source Perl tools for bioinformatics, genomics and life science research
Books on PCR, polymerase chain reaction
CORGCOmparative Regulatory Genomics Conserved non-coding genomic DNA segments
PRINTSDatabase of fingerprints - conserved motifs in protein families
PlantPromDatabase of Plant Promoter Sequences
DiProDBDinucleotide Property Database
EPDEukaryotic Promoter Database
EIDExon Intron Database
Gallery of Sequence Logos
GeneCards: Database of human genes
Genetic Codes for translation of RNA sequence into amino acids
INSDCInternational Nucleotide Sequence Database Collaboration
RefSeqNCBI Reference Sequence: a curated non-redundant sequence database of genomes, transcripts and proteins
NCBI Single Nucleotide Polymorphism (SNP) Database, Human Genome
Oral Pathogen Sequence Databases
PhosphoSite, protein modification sites
Plant Specific Database
PANTHERProtein ANalysis THrough Evolutionary Relationship
Reference Sequence (RefSeq) Database
Refseq Accession Number Format
STRBaseShort Tandem Repeat (STR) DNA Internet DataBase
SRS: Sequence Retrieval System
TREDTranscriptional Regulatory Element Database
TreeFamTree families database of phylogenetic trees of animal genes
Vector Database

Note: GenBank is a redundant archival sequence database. For reference standards use the newer NCBI Reference Sequence (RefSeq). RefSeq accession numbers are distinguished from GenBank accessions by their format of [2 characters|underline]. For example, a RefSeq mRNA code is NM_000336 (Additional examples and key).

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