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Biomedical directory
Biomedical Databases
Carbohydrate Databases
Enzyme Databases
Genome Databases
Genome, Prokaryotic
Glossaries
Lipid Databases
Metabolic Pathways
Mutation Databases
Nomenclature
Nomenclature - Gene
Organelle Databases
Plasmid Databases
Protein Databases
RNA Databases
Sequence Databases
Species Databases
Structure Databases
Virus Databases
Primer Tools
Protein Tools
Sequence Tools
Biomedical
: DNA, RNA and Protein Structure Databases
Abbreviation
Database
PDB
• Protein Data Bank
Anatomy and Taxonomy of Protein Structure
Atlas of Side-Chain and Main-Chain Hydrogen Bonding
BioInfo Bank - databases related to structure, property and function of biomolecules
Columba - A Database of Protein Structure Annotation
PDBsum
Database of 3D structures of proteins and nucleic acids
CC+
Database of coiled-coil structures
DIP
Database of Interacting Proteins
SitesBase
Database of known ligand binding sites within the PDB
Database of Macromolecular Movements
BindingDB
Database of measured binding affinities for biomolecules
DisProt
Database of Protein Disorder - Proteins that lack fixed 3D structure in their native states
Pfam
Database of protein families and hidden Markov models (HMMs)
iMOTdb
Database of Spatially Interacting Motifs in Proteins
DBAli
Database of Structure Alignments
DSSP
Definition of Secondary Structure of Proteins given a set of 3D coordinates
DASSD
Dihedral Angle and Secondary Structure Database of Short Amino Acid Fragments
CATH
Hierarchical domain classification of protein structures in the Protein Data Bank (PDB)
ICBS
Inter-Chain Beta-Sheets
JAIL
Interfaces between protein chains and proteins and nucleic acids
Introduction to Protein Data Bank Format
Jena Library of Biological Macromolecules
Membrane Proteins of Known 3D Structure
Molecular Graphics Visualization Software
MINT
Molecular Interactions Database
MMDB
Molecular Modeling DataBase
Molecular Models for Biochemistry
NCBI Entrez Structure Database Search
NDB
Nucleic Acid Database
PIRSF
PIR Super Family Classification System
ADAN
Prediction of protein-protein interAction of moDular domAiNs
PDBe
Protein Data Bank in Europe
PQS
Protein Quaternary Structure Database
ProteinDBS
Protein Structure Comparisons
CASP
Protein Structure Prediction Center
Structural Biology Software Database
SCOWLP
Structural Characterization Of Water, Ligands and Proteins
SCOP
Structural Classification of Proteins
SGKB
Structural Genomics Knowledgebase
SFLD
Structure-Function Linkage Database
SURFACE
Surface Residues Annotated, Compared and Evaluated
