DNA, RNA and Protein Structure Databases

Abbreviation	Database
PDB	• Protein Data Bank
	Anatomy and Taxonomy of Protein Structure
	Atlas of Side-Chain and Main-Chain Hydrogen Bonding
	BioInfo Bank - databases related to structure, property and function of biomolecules
	Columba - A Database of Protein Structure Annotation
PDBsum	Database of 3D structures of proteins and nucleic acids
CC+	Database of coiled-coil structures
DIP	Database of Interacting Proteins
SitesBase	Database of known ligand binding sites within the PDB
	Database of Macromolecular Movements
BindingDB	Database of measured binding affinities for biomolecules
Pfam	Database of protein families and hidden Markov models (HMMs)
iMOTdb	Database of Spatially Interacting Motifs in Proteins
DBAli	Database of Structure Alignments
DSSP	Definition of Secondary Structure of Proteins given a set of 3D coordinates
DASSD	Dihedral Angle and Secondary Structure Database of Short Amino Acid Fragments
HIC-Up	Hetero-compounds (small molecules) in files from the PDB
CATH	Hierarchical domain classification of protein structures in the Protein Data Bank (PDB)
ICBS	Inter-Chain Beta-Sheets
JAIL	Interfaces between protein chains and proteins and nucleic acids
	Introduction to Protein Data Bank Format
	Jena Library of Biological Macromolecules
	Membrane Proteins of Known 3D Structure
	Molecular Graphics Visualization Software
MINT	Molecular Interactions Database
MMDB	Molecular Modeling DataBase
	Molecular Models for Biochemistry
	NCBI Entrez Structure Database Search
NDB	Nucleic Acid Database
ADAN	Prediction of protein-protein interAction of moDular domAiNs
PDBe	Protein Data Bank in Europe
PQS	Protein Quaternary Structure Database
ProteinDBS	Protein Structure Comparisons
CASP	Protein Structure Prediction Center
	Structural Biology Software Database
SCOWLP	Structural Characterization Of Water, Ligands and Proteins
SCOP	Structural Classification of Proteins
SGKB	Structural Genomics Knowledgebase
SFLD	Structure-Function Linkage Database
SURFACE	Surface Residues Annotated, Compared and Evaluated

Abbreviation

Database

PDB

• Protein Data Bank

Anatomy and Taxonomy of Protein Structure

Atlas of Side-Chain and Main-Chain Hydrogen Bonding

BioInfo Bank - databases related to structure, property and function of biomolecules

Columba - A Database of Protein Structure Annotation

PDBsum

Database of 3D structures of proteins and nucleic acids

CC+

Database of coiled-coil structures