| BaCelLo | A predictor for five classes of subcellular localization (secretory way, cytoplasm, nucleus, mitochondrion and chloroplast). |
| Cell-PLoc | Web-servers for predicting subcellular localization of proteins in different organisms. |
| Gneg-mPLoc | Predicting subcellular localization of Gram-negative bacterial proteins. |
| PSORT | Prediction of protein sorting signals and localization sites. |
| SherLoc2 | Predicting Protein Subcellular Localization. |
| SignalP | Server predicts the presence and location of signal peptide cleavage sites in amino acid sequences from different organisms. |
| TOPCONS | Membrane protein topology and signal peptide prediction. |
| TargetP | Predicts the subcellular location of eukaryotic proteins. |