| UniProt | • Universal Protein knowledgebase (Swiss-Prot @ TrEMBL) |
| YPM | 2D Gel Map of Saccharomyces cerevisiae proteins |
| @ Protein Structure Databases |
| COGs | Clusters of Orthologous Groups of proteins |
| PSORTdb | Database of Protein Subcellular Localizations for bacteria and archaea |
| PPARgene | Database of experimentally verified and computationally predicted target genes of Peroxisome proliferator-activated receptors (PPARs). |
| Phospho.ELM | Database of experimentally verified phosphorylation sites in eukaryotic proteins |
| PROSITE | Database of protein families and domains |
| G-Protein Coupled Receptor Database |
| Globin Gene Server |
| Heme Protein Database |
| Human Intermediate Filament Database |
| PPD | Human Plasma Proteome Project Data Central at PeptideAtlas |
| Human Protein Atlas |
| IUPHAR Compendium of Ion Channels |
| Epitope tags | List of Epitope tags such as V5, c-myc, and HA |
| List of post-translational modifications |
| Mammalian Degradome Database: Complete repertoire of proteases expressed by a tissue or organism |
| Mucin Database of mucin genes, transcripts, protein sequences and functional domains |
| NCBI Protein Database |
| NRLiSt BDB | Nuclear Receptors Ligands and Structures Benchmarking DataBase |
| PROXiMATE | PROtein-protein compleX MutAtion ThErmodynamics Database |
| PRIDE | PRoteomics IDEntifications database |
| SRPDB | Signal Recognition Particle Database |
| 2DPAGE | Two-dimensional polyacrylamide gel electrophoresis database |
| UniProt Knowledgebase Manual |
| VKCDB | Voltage-gated potassium channel database |
| World-2DPAGE Portal - gel-based proteomics databases |
