Protein Databases

Biomedical Databases

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Protein Sequence Databases
Abbreviation	Database
UniProt	• Universal Protein knowledgebase (Swiss-Prot @ TrEMBL)
YPM	2D Gel Map of Saccharomyces cerevisiae proteins
	@ Protein Structure Databases
COGs	Clusters of Orthologous Groups of proteins
PSORTdb	Database of Protein Subcellular Localizations for bacteria and archaea
FusionDB	Database of bacterial and archaeal gene fusion events
PPARgene	Database of experimentally verified and computationally predicted target genes of Peroxisome proliferator-activated receptors (PPARs).
Phospho.ELM	Database of experimentally verified phosphorylation sites in eukaryotic proteins
PROSITE	Database of protein families and domains
	G-Protein Coupled Receptor Database
	Globin Gene Server
	Heme Protein Database
	Human Intermediate Filament Database
PPD	Human Plasma Proteome Project Data Central at PeptideAtlas
	Human Protein Atlas
	IUPHAR Compendium of Ion Channels
Epitope tags	List of Epitope tags such as V5, c-myc, and HA
	List of post-translational modifications
	Mammalian Degradome Database: Complete repertoire of proteases expressed by a tissue or organism
	Mucin Database of mucin genes, transcripts, protein sequences and functional domains
	NCBI Protein Database
NRLiSt BDB	Nuclear Receptors Ligands and Structures Benchmarking DataBase
PROXiMATE	PROtein-protein compleX MutAtion ThErmodynamics Database
PRIDE	PRoteomics IDEntifications database
SYSTERS	Protein Family Database
SRPDB	Signal Recognition Particle Database
2DPAGE	Two-dimensional polyacrylamide gel electrophoresis database
	UniProt Knowledgebase Manual
VKCDB	Voltage-gated potassium channel database
	World-2DPAGE Portal - gel-based proteomics databases