Israel Science and Technology Directory

Biomedical Databases

DNA, RNA and Protein Structure Databases
PDB• Protein Data Bank
PDBe• Protein Data Bank in Europe
* APIs for Molecular Structure Databases
Anatomy and Taxonomy of Protein Structure
BMRBBiological Magnetic Resonance Data Bank
CCDChemical Component Dictionary
PDBeChemChemical Components in the PDB (ligands, small molecules)
Dali Database of structural neighbours
CoDNaSDatabase of Conformational Diversity of Native State in proteins
Database of Macromolecular Movements
DisProtDatabase of Protein Disorder
DBAliDatabase of Structure Alignments
MobiDBDatabase of protein disorder and mobility annotations
PfamDatabase of protein families and hidden Markov models (HMMs)
DSSPDefinition of Secondary Structure of Proteins given a set of 3D coordinates
PDB-101Educational Portal of Protein Data Bank
EMDBElectron Microscopy Data Bank
CATHHierarchical domain classification of protein structures in the Protein Data Bank (PDB)
ModBaseHomology Modeling: Database of Comparative Protein Structure Models
SWISS-MODELHomology Modeling: Database of three-dimensional comparative protein structure models
PMPHomology Modeling: Protein Model Portal
Introduction to Protein Data Bank Format
Iridium: Protein-Ligand Structure Database
JenaLibJena Library of Biological Macromolecules
Molecular Graphics Visualization Software
NCBI Structure Database
NIH 3D Print Exchange provides models in formats that are readily compatible with 3D printers
NDBNucleic Acid Database
PDB File Format Documentation
PIRSFPIR Super Family Classification System
PDBsumPictorial database of 3D structures in the Protein Data Bank
PDBjProtein Data Bank Japan
CASPProtein Structure Prediction Center
SUPERFAMILY database of structural and functional annotation for all proteins
SBKBStructural Biology Knowledgebase
Structural Biology Software Database
SCOPeStructural Classification of Proteins - extended
SCOP2Structural Classification of Proteins 2
SFLDStructure-Function Linkage Database